(rr-renv-resources)=
# Resources and Checklist

(rr-renv-resources-checklist)=
## Checklist

- Choose the most appropriate method for your project for capturing your computational environment
- Capture your computational environment
- Share your captured computational environment along with your results/analysis

(rr-renv-resources-learn)=
## What to Learn Next

We recommend reading the chapter on {ref}`rr-testing`, and then the chapter on {ref}`rr-ci`.
Note that the chapter on {ref}`rr-vcs` is a prerequisite for the chapter on continuous integration. The {ref}`rr-open` chapter also contains further information on sharing research reproducibly.

(rr-renv-resources-reading)=
## Further Reading

The [Docker documentation](https://docs.docker.com/get-started/) contains a lot of information about containers in general.


(rr-renv-resources-bibliography)=
## Bibliography

- [semantic versioning](https://semver.org) **Creative Commons - CC BY 3.0**

- [A. Brinckman, et al., Computing environments for reproducibility: Capturing the "Whole Tale", Future Generation Computer Systems (2018), https://doi.org/10.1016/j.future.2017.12.029](https://www.sciencedirect.com/science/article/pii/S0167739X17310695) **Attribution 4.0 International (CC BY 4.0)**

- [Paper presenting singularity](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) **CC0 1.0 Universal (CC0 1.0)**

- [Paper presenting singularity](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) **CC0 1.0 Universal (CC0 1.0)**

- [Package Managers](https://opensource.com/article/18/7/evolution-package-managers) **Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)**

- [Talk by Will Furnass on Conda](https://github.com/willfurnass/conda-rses-pres/blob/master/content.md) **Attribution-NonCommercial-ShareAlike 4.0 International**

- [YAML tutorial](https://gettaurus.org/docs/YAMLTutorial/) **[Apache 2.0](http://www.apache.org/licenses/LICENSE-2.0)**

- [Binder illustration](https://opendreamkit.org/2017/11/02/use-case-publishing-reproducible-notebooks/) **Permission to use granted by Juliette Taka, Logilab and the OpenDreamKit project.**

- [mybinder docs intro](https://github.com/jupyterhub/binder/blob/master/doc/introduction.rst) **[BSD 3-Clause](https://github.com/binder-examples/requirements/blob/master/LICENSE)**

- [Zero to Binder - official tutorial](https://github.com/Build-a-binder/build-a-binder.github.io/blob/master/workshop/10-zero-to-binder.md) **[BSD 3-Clause](https://github.com/binder-examples/requirements/blob/master/LICENSE)**

- [Zero to Binder - adapted version](https://github.com/the-turing-way/the-turing-way/blob/main/workshops/boost-research-reproducibility-binder/workshop-presentations/zero-to-binder.md) **MIT**

- [Zero to Binder](https://github.com/Build-a-binder/build-a-binder.github.io/blob/master/workshop/10-zero-to-binder.md) **[BSD 3-Clause](https://github.com/binder-examples/requirements/blob/master/LICENSE)**

- [Bryan Brown LITA blog](https://litablog.org/2014/12/virtual-machines-in-a-nutshell/) **[Copyright granted for educational use](http://www.ala.org/copyright)**
- [What is docker?](https://opensource.com/resources/what-docker) **CC BY-SA 4.0**

- [What are containers?](https://opensource.com/resources/what-are-linux-containers?intcmp=7016000000127cYAAQ) **CC BY-SA 4.0**
- [Docker carpentry](http://www.manicstreetpreacher.co.uk/docker-carpentry/aio/) **Creative Commons Attribution 4.0**
- [Geohackweek tutorial](https://geohackweek.github.io/Introductory/docker-tutorial_temp/) **Creative Commons Attribution 3.0 Unported**
- [Nüst, D., Sochat, V., Marwick, B., Eglen, S., Head, T., Hirst, T., & Evans, B. (2020, November 10). Ten simple rules for writing Dockerfiles for reproducible data science, https://doi.org/10.1371/journal.pcbi.1008316
](https://github.com/nuest/ten-simple-rules-dockerfiles) **Creative Commons Attribution 4.0 International**